Light-powered microbes are super-producing chemical factories

Journal Reference:

  1. Yoshihiro Toya, Yoko Hirono-Hara, Hidenobu Hirayama, Kentaro Kamata, Ryo Tanaka, Mikoto Sano, Sayaka Kitamura, Kensuke Otsuka, Rei Abe-Yoshizumi, Satoshi P. Tsunoda, Hiroshi Kikukawa, Hideki Kandori, Hiroshi Shimizu, Fumio Matsuda, Jun Ishii, Kiyotaka Y. Hara. Optogenetic reprogramming of carbon metabolism using light-powering microbial proton pump systems. Metabolic Engineering, 2022; 72: 227 DOI: 10.1016/j.ymben.2022.03.012

In a study published recently in Metabolic Engineering, the researchers have revealed that microorganisms can be engineered to use light for energy, freeing up cellular resources to produce biomanufactured products.

Metabolically engineered microorganisms are used to produce various useful chemicals throughout the world, but there’s a catch: both microbial growth and chemical synthesis require a molecule called ATP as an energy source. Because of this, keeping the cellular “factories” healthy limits chemical production.

“Microorganisms that produce useful substances are usually developed by modifying metabolism to convert energy that would normally be used for growth into a resource for synthesizing these target substances,” explains Yoshihiro Toya, first author on the study. “We reasoned that instead we could use light, an external energy source, to improve production of useful substances without disrupting the microorganisms’ natural metabolism.”

To test this, the researchers introduced a heterologous membrane protein called rhodopsin into Escherichia coli, a common microorganism used in biomanufacturing. Rhodopsin is a pump that is activated by light, and the action of the pump leads to the generation of ATP without using the cell’s natural machinery (known as the TCA cycle and respiratory chain) to produce it. This approach has the added benefit of reducing the emission of carbon dioxide, a byproduct of the TCA cycle.

“The results clearly showed the success of our strategy,” states Kiyotaka Y. Hara, project leader. “The cells expressing rhodopsin generated significantly more chemical products when exposed to light, and the carbon flow in these cells was directed away from energy generation and toward chemical synthesis.”

Once they had proved that this concept worked for various compounds such as 3-hydroxypropionate, mevalonate, and glutathione, the researchers went on to create three new strains of E. coli. One of these strains expressed super-rhodopsins with even better pump activities than the original rhodopsin that was tested; this strain was developed by Dr Toya’s group at Osaka University. The other two strains incorporated synthetic biological systems that provided an intrinsic supply of retinal, the activator of rhodopsin, and optimized the balanced expression of multiple genes in the relevant metabolic pathway; these strains were established by Dr Jun Ishii’s group at Kobe University. Finally, Dr Hara’s group at the University of Shizuoka integrated all of these systems into a single E. coli strain that produces a chemical in a light-dependent manner.

“Our findings suggest that biomanufactured microorganisms designed to use light for energy source can be used to efficiently biosynthesize useful target compounds,” states Hara.

This new approach is expected to increase the efficiency of producing useful materials through fermentation and other bioprocesses while simultaneously reducing carbon emissions.

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Light-powered microbes are super-producing chemical factories

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